Clinical Bioinformaticist-GenomicsSan Diego, California
Computational-biologists/bioinformaticists in a large-scale "production" setting to deploy, maintain and evolve the bioinformatics framework for a high-throughput, ultra-rapid turnaround time whole-genome sequencing based clinical setting. Part of a team that'll build the infrastructure ground up using the latest and greatest of the technologies in infrastructure, data storage and analytics, with a strong focus on automation and integration. The environment is highly cross-functional, with a rich medical research heritage and multitude of collaborations with the biotech industry, academic institutions and federal programs.
Bachelor's Degree in Area of Study in a Field Related to the Position
1 year of experience
Experience analyzing next-gen sequencing data (Illumina whole genomes or exomes): BCL to annotated variants
Experience developing and maintaining pipelines for 24x7 automated bioinformatics analyses
Experience working with and understanding of open source NGS tools like bwa, samtools, vcftools, picard, GATK, Freebayes, ANNOVAR, VEP, etc.
Experience with unix/linux operating system and software development using any of Ruby, Python, Perl, Bash
Experience working with HPC scheduling systems such as Moab, TORQUE, LSF, OpenGrid Engine, etc.
3 years of experience
Experience in CNV and SV calling
Previous experience working in a CAP/CLIA environment
Previous experience with cloud-based development or analysis and performing benchmarking of bioinformatics tools
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