Skip to main content

The health and safety of our patients and employees is our highest priority. We have mobilized a swift, efficient, and comprehensive response to the current situation related to COVID-19 so that our staff can stay on the front lines, giving care safely. We welcome your application and will connect with you as soon as we can, possibly virtually. Please note that many positions will not be progressing as fast as they normally would, as we prioritize our current needs. Although some positions will be on hold while we focus on providing support for our staff, trust that your application will be reviewed and considered for future openings.

Sr Bioinformaticist - Genomics

San Diego, California
Apply
Job ID 4124 Date posted 06/25/2020 Schedule Full-Time Shift Day Department Information Services; Information Technology

JOB SUMMARY:

Computational-biologists/bioinformaticists in a large-scale "production" setting to deploy, maintain and evolve the bioinformatics framework for a high-throughput, ultra-rapid turnaround time wholegenome sequencing based clinical setting. Part of a team that'll build the infrastructure ground up using the latest and greatest of the technologies in infrastructure, data storage and analytics, with a strong focus on automation and integration. The environment is highly cross-functional, with a rich medical research heritage and multitude of collaborations with the biotech industry, academic institutions and federal programs.

MINMUM QUALIFICATIONS:

Bachelor's Degree

Experience analyzing next-gen sequencing data (Illumina whole genomes or exomes): BCL to annotated variants

Experience working with and understanding of open source NGS tools like bwa, samtools, vcftools, picard, GATK, Freebayes, ANNOVAR, VEP, etc.

Experience with unix/linux operating system and software development using any of Ruby, Python, Perl, Bash

Experience working with HPC scheduling systems such as Moab, TORQUE, LSF, OpenGrid Engine, etc.


PREFERRED QUALIFICATIONS:

Master's Degree

Experience in CNV and SV calling

Previous experience working in a CAP/CLIA environment

Previous experience with cloud-based development or analysis and performing benchmarking of bioinformatics tools

#SJ #AH

Apply

Job Alerts

Interested InSelect a job category from the list of options. Search for a location and select one from the list of suggestions. Finally, click “Add” to create your job alert. Click on the X to remove a category.

  • Information Services, San Diego, California, United StatesRemove
  • Information Technology, San Diego, California, United StatesRemove